P. patens protonema by S. Tintelnot



Literature search Databases
Pubmed (NCBI) NCBI home
Google Scholar BLAST search 
GoPubMed: combines PubMed queries with GO terms CDD: conserved domain database
  COGs: clusters of orthologous groups
Stefan's corner Genomes
Weather by Meteomedia Gquery meta browser
TU Chemnitz German-English dictionary RefSeq: non-redundant sequences for major research organisms
Doodle Taxonomy browser
  Unigene: non-redundant EST clusters
Traveling Trace archive (genomes under way)
Deutsche Bahn - connection query Genomes
Google flights Coge plants
Via Michelin route planing DoE Joint Genome Institute
  ENSEMBL Genome Browser
Tools GOLD: Genomes OnLine Database
Phylogeny Marchantia
Tree of Life web project Phytozome
Timetree - species divergence times Plaza
Phylodome: visualize/analyze phylogenetic distribution of domains TAIR (Arabidopsis)
Phylogeny software (list) TIGR / JCVI
Treeviewer: Mesquite Dendroscope FigTree Proteins
Promoter & TFBS analysis Interpro / PFAM / Prosite
Athamap - Arabidopsis TFBS Swissprot
CONREAL / Footprinter / PLACE Gene Ontology
Eukaryotic Promoter Database (EPD) AmigGO GO Browser
MEME Gene Ontology home
Proteins QuickGo GO Browser (EBI)
ExPASy tools Repeats
JAFA: Protein function prediction meta server Repbase
Targeting and localization list of tools TIGR plant repeat database
PredLoc Misc. DBs
MultiLoc / TargetLoc & SherLoc Brenda: enzyme knowledgebase
PA-SUB (protein sorting prediction) EMBL online sequence submission & feature description
PSORT (protein sorting prediction) KEGG (pathways and compounds)
Signal sequence / gene prediction (CBS) REBASE (restriction enzymes)
TargetP: prediction of subcellular location (includes ChloroP)  
TMBETA-NET: prediction of transmembrane beta strands Fun(ny) stuff
TMHMM: prediction of transmembrane alpha helices Sports
Interaction Bundesliga / SC Freiburg
BIND: Biomolecular Interaction Network FIS / DSV / SVS
DIP: Database of Interacting Proteins Feldberg livecams
InterPreTS: interaction prediction Shopping
STRING: Retrieval of interacting genes/proteins ThinkGeek / Burkheimer Kräuterhof
Structure Misc. weird stuff
CATH database of structural domains Earth from above / Google earth
FUGUE search against HOMSTRAD Geogen surname mapping
HMMSTR ab initio protein structure modeling using homology SETI@home screen blanker / Distributed computing
PDB protein substructure visualization TV cult(ure)
PPG: makes nice 3D protein images for publications Ms. Dewey
Protein structure data mining Star Wars
WebPACADE protein structure search The Nerd Test
BIOPREDsi: predicts optimal siRNA sequences Miscellaneous
E-RNAi: design of RNAi constructs Check out browser colors
microInspector: detection of miRNA binding sites DENIC (.de) / INTERNIC (.com, .org, .net)
miRU: plant microRNA target finder Hoax info: is it a virus or a joke?
MFOLD: RNA folding Neue deutsche Rechtschreibung
RFAM (RNA family DB) Postleitzahlen (city codes) / Telefonbücher (phone books)
SFOLD: RNA folding and design Paleogeography: images of prehistoric earth
Vienna RNA secondary structure package SurveyMonkey
Misc. tools Technelysium (Chromas)
Primer design (Primer3) U-FR academic dictionary
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